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Published 20 hours ago • verified publisher icon xjtu-omics

Baseline step for tumor-only pipeline

Open komalsrathi opened this issue 2 years ago • 2 comments

Hi,

We have 91 cram files that we need to run through the tumor-only pipeline. Should we run the baseline step with all the 91 files or randomly take a subset? Please let me know.

Thanks!

komalsrathi avatar Jan 24 '23 10:01 komalsrathi

I think maybe you could use all of these files.

PengJia6 avatar Mar 09 '23 08:03 PengJia6

Do we need normal bams for baseline step? If yes, can you please share normal bams ?

ankurs103 avatar Jul 10 '23 10:07 ankurs103