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xinehc
ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Database
hello, how can i get SARG v3.2.1-S nucleic acid database? thank you!
Hi, When my data volume is large, I want to accelerate the alignment process. So I want to ask is it reasonable to use diamond(blastx) instead of blast(blastx) in ARG-OAP...
您好，我最近开始学习您开发的这个软件，有一些问题想向您请教一下。 1. ARGs-OAP的2.3版本我记得第一步就需要上传一个metadata，现在3.2这个版本两步都不自己需要上传metadata了是嘛。 2. 之所以关注metadata，是因为我对于2.3版本上传的metadata最后一列readlength有些疑问，我的宏基因组样本里reads长度并不是一个固定的数值，一个样本里reads短到50，长至100（如图片），像这种情况readlength要怎么填写呢，填写最小值或者平均值？当然3.2版本已经不需要上传metadata了，我这种reads长度不一的样本不影响软件使用吧？ 3. 图片里的宏基因组数据是不是需要处理成您示例数据那样，就图片里的数据来说只保留名称和序列两行（@开头的行以及序列行）。 多有打扰，期待您的回复，谢谢！ 
hi, I would like to know what is meaning of "count" and "copy" in the output file 'blastout.filtered.txt'. thank you
Hi~~ I was trying to install args_asp package using conda. But something wrong, error came out and couldn't install successfully. error message is listed below: "Retrieving notices: ...working... done WARNING...
Hello The error message, "CRITICAL: No target sequence remained after merging structure files, no further normalization will be made," indicates that there is an issue related to merging structure files...
有个非常奇怪的现象，使用自定义的核苷酸数据库，流程中是使用单端数据bwa分别比对，然后合并提取，我这边尝试了直接用双端数据比对提取序列，发现两者区别很大。单端提取只有24000条，双端提取9万多条。 
hello, When I was using args_oap/3.2.4 to create a database, I was prompted to enter the file in an incorrect format.  But I was able to run the same...
I used the protein files provided by bacmet database to build a custom database of args_oap, extracted the GI_number of the protein database fasta file according to the tips of...
