xiaoyeye

Correct!

Hi, This file is used to separate the gene pair list. Let's regard the gene with outgoing edge in KEGG as TF, and gene with ingoing edge as Target. Then...

Hi, For the first paragraph. correct. For the second paragraph. I am not clear what do you mean by "some TF-target pairs which I don't know the label,". For the...

Hi, The fact that the code can work is expected. However, if you have your own expression data, you have got to generate your own training data to train the...

1) I used this function "keras.utils.to_categorical". I believe it is like [ 0,1, 2]. Not sure it is updated. The best way should be to feed it using a small...

Hi, I am happy to hear that you can reach the performance of Fig. 2. For the predct_np_y.py. It may have some errors, like if num_classes = 2, the activation...

Hi, It seems that the problem lies in the store function. I wonder what if you change to rpkm = store['RPKMs']? Best

Well. It is hard for me to debug based on other datasets. Generally speaking, the "store" function is used to read the expression data as a pd.DataFrame format, so I...

Great! Yes, you can modify this number with your own data. Best

Hi, Thanks for your attention and patience. It is really a problem when you using the new Spektral's layers. I suggest use the old one firstly as mentioned in readme....