GCNG
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xiaoyeye
using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions
Hello, I am getting the following message while running "data_generation_interaction_ten_fold.py" calculating distance matrix, it takes a while 0 1 2 3 4 5 6 zsh: illegal hardware instruction python data_generation_interaction_ten_fold.py...
Hello, When I ran the sample code with the old version of spektral as "spektral"github suggests, I am experiencing below error: ValueError: Layer model expects 2 input(s), but it received...
Fixed typo in variable: `distance_matrix_threshold_I_Ncrs` --> `distance_matrix_threshold_I_N_crs`
Prevents error from trying to dump undeclared variable
Hi, there are some updates to the Spektral's Convolutional layers: A_in = Input(tensor=sp_matrix_to_sp_tensor(fltr)) will lead to failure And GraphConv has been removed as well. I will be really appreciated if...
Dear Dr. Xiao, a file ( whole_FOV_distance_I_crs_140 ) appeared in data_generation_interaction_ten_fold.py. Could you kindly suggest how it produced, or just share it with me? Thank you for your help!
Hi, When I ran the sample code, I encountered the following error > Traceback (most recent call last): File "gcn_LR2_LR_as_nega_big.py", line 75, in model = Model(inputs=[X_in, A_in], outputs=output) File "/Users/zhangl18/opt/anaconda3/envs/tf/lib/python3.7/site-packages/keras/legacy/interfaces.py",...
