metaerg
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xiaoli-dong
Does MetaErg perform any gene abundance normalization before mapping to higher functional Ontologies/pathways? The library size of my metagenomic samples are highly variable and without normalizing there will likely be...
I am loving MetaErg. It makes annotations much easier. Thank you! Many of my jobs had to be canceled while running, unfortunately. Nothing to do with MetaErg. I know you...
I recieved the following error for multiple samples: `DBD::SQLite::st execute failed: disk I/O error at /Drives/K/amirza/MetaErgInstallHelper/metaerginstall/metaerg/bin/output_reports.pl line 1141` How can I prevent this problem in the future? Perhaps a database...
This issue is possibly the same as in #4 but since it has not received any attention, I will open this issue. After fixing my workflow as described in #10,...
Hi, Thank you very much for this awesome pipeline! I have a problem with my master.tsv file, kegg_pathways and metacyc_pathways are not reported for the genes - see attached. (They...
Hi, Great pipeline! Its such a pain to install all the packages necessary, especially the Perl modules - which I was unsuccessful. It would be great to make it easier...
Add correct BLAST+ download link and force XML::DOM::XPath installation to ignore their broken test.
Hello! I'm trying to use the utility scripts for generating a report for a binned genome and adding bin IDs to the protein coding sequences and master.tsv file. I'm getting...
I've been able to run metaerg successfully with and without providing a depth file on some of my datasets using: metaerg.pl --dbdir /projects/p30777/db --depth /projects/p30777/metagenome_data/bams/[sample_ID]/depth.txt /projects/p30777/metagenome_data/contigs/[sample_ID]_contigs.fa --sp --tm --outdir /projects/p30777/Omics_methods_pub/metaerg/[sample_ID]_depth...
Hello, When I try to install the required SWISS::Entry; and SWISS::KW; perl modules using cpan, I get: ``` (base) slambrecht@WE11sv03:~/.local/share/.cpan/build/local-lib-2.000024-oG3DdT$ cpan SWISS::KW; Loading internal null logger. Install Log::Log4perl for logging...
