BioNEV
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xiangyue9607
Graph Embedding Evaluation / Code and Datasets for "Graph Embedding on Biomedical Networks: Methods, Applications, and Evaluations" (Bioinformatics 2020)
Hello Xiang, Since I see that in the [performance of the various methods from the supplementaries](https://oup.silverchair-cdn.com/oup/backfile/Content_public/Journal/bioinformatics/36/4/10.1093_bioinformatics_btz718/1/btz718_supplementary_data.pdf?Expires=1613039444&Signature=nuxsrSifOr3GenkjshApXbQr5I47EMMcWyi6k783Y9QL5Vvo7p7VswmUYrd643bNm4mDGC7~I2tCyoFbKdqzEPLkSPlBfYNYLJ-k~ydaxro7RfwrplUh88sghHucKZpE9wVyOH6zK909I0o0jqtDj6oWVUoKasbpJKHfhX1N2EsDoN1feU64i05F3rsvCk3uAEB21cJTgs4H9WsciO4I2wb1KPKLhW~4F1EjmlxCMGjiJe60E8TqmhKhqNx1OztO-4BFMJEii~BCwE4JpUrfJ1Rf7REIlVehA22mJs15XTRRAWbmNKhQoUp43NHdlRerR1dtW29ofDauBTHBNOLlVQ__&Key-Pair-Id=APKAIE5G5CRDK6RD3PGA) there is a standard deviation, I assume that there must be a number of...
Hi, Is there a way to save and then use the representations generated here to use as feature in any other network?
Hi, I am new to this area, i am confused about wod2vec part in node2vec. As there are different pre-trained models of word2vec available, such as generic English and Pubmed...
Hi @xiangyue9607 Thanks for releasing these datasets. Recently, I try to use Mashup_PPI to do some experiments, and find that there are many duplicate edges in the edgelist. Perhaps it...
There are several KGE models implemented in https://github.com/smartDataAnalytics/PyKEEN from @mali-git that cover translational distance models (e.g., TransE, TransH, TransR, TransD, UM, SE) and semantic matching models (e.g., RESCAL, DistMult, ERMLP,...
This repository includes five nice datasets which makes reproduction much easier, but it's missing whatever scripts (or instructions if manually done) were used to generate them. This would be helpful...
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Graph Embedding Evaluation / Code and Datasets for "Graph Embedding on Biomedical Networks: Methods, Applications, and Evaluations" (Bioinformatics 2020)