blacktie
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Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline
as of now: ``` blacktie --prog all config.yaml --mode qsub_script ``` writes your individual qsub scripts but you have to submit them all by hand. `blacktie` should be able to...
``` blacktie --prog all ../../config_files/tophat_cufflinks_Cq_0-4-6-8-10.gtf_strict.hpc.yaml --mode qsub_script [Note] Starting tophat step. [Note] Starting cufflinks step. [Note] Starting cuffmerge step. [Note] Starting cuffdiff step. sh: R: command not found Traceback (most...