xgi issues

Speed up `draw_xgi_nodes` and `draw_xgi_hyperedges`

1

If we remove the for-loop in the function that draws the hypergraph nodes with `scatter` and instead pass iterables into the scatter function, it could be faster. Also, if we...

nwlandry

improve

There is no way of removing attributes or stats

1

Perhaps we can implement this as part of `H.clear()`, or as a standalone method..

leotrs

new feature

Add the ability to draw hypergraphs as a bipartite graph

14

This PR does the following: * Removes `draw_dihypergraph` and moves its contents to `draw_bipartite`. * The `draw_bipartite` now handles `Hypergraph` and `DiHypergraph` objects. * Added the `bipartite_spring_layout` position function.

nwlandry

Update docs

3

Updated the following: * The "Using XGI" page * Added missing documentation for the Encapsulation DAG conversion module * Added links to the JOSS paper * Updated the list for...

nwlandry

`rescale_sizes` doesn't work for numerical inputs

3

Minimal working example: ```python import xgi H = xgi.Hypergraph([[1, 2, 3]]) nodal_property = [-1, 0, 1] xgi.draw(H, node_size=nodal_property, rescale_sizes=True) ``` gives the error `ValueError: node_size cannot contain negative values.` We...

nwlandry

improve

Returning node positions from `xgi.draw`

3

I want to use the same node positions to draw a few different hypergraphs on the same set of nodes. My lazy approach was to draw the first hypergraph with...

tlarock

Should draw with convex hull be the default and only behavior?

6

With PR #491, drawing edges as convex hulls is now an option of `draw`. I'm wondering, however, if there is a case where we don't want this behavior. I'm specifically...

nwlandry

viz