arguments 'show.output.on.console', 'minimized' and 'invisible' are for Windows only

[linzhangTuesday]

Hi I am trying to follow the vignette here https://wzthu.github.io/esATAC/doc/vignettes.html in Rstudio.

The first example of case-control using atacPipe2() failed for the error of "this function is still under developing".

Then I tried the example of single sample in 1.3.2 using atacPipe(), it have been running for over an hour using the sample fastq chr20_1.1.fq.gz. And the console stays at

"arguments 'show.output.on.console', 'minimized' and 'invisible' are for Windows only".

I am not sure whether the pipeline is stuck or it is still running. Also, changing the thread number in the function to 8 seems not working as the console outputs "--threads 2" anyway.

Could anyone give suggestions on these? Thanks in advance!