MCScanX
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wyp1125
MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
Hi, I am not sure if I am missing something, but could it be possible to extract the entire block coordinates? So instead of the genes in that block, we...
Hello, I am not able to get the downstream_analyses executable detect_collinear_tandem_arrays to run properly. I downloaded MCScanX from the MCScanX homepage (Dec 2017), and have compiled on two different systems...
@wyp1125 @XTan hi,i hope you will be fine.i need your help, i am new user of MCScanX.i have successfully installed MCScanX. after that i have installed ncbi-blast+.now i am confuse...
Dear Yupeng, in the manual (http://chibba.pgml.uga.edu/mcscan2/documentation/manual.pdf) you are stating that the user can specify if higher or lower values are preferred when using `MCScanX_h` ("When the third column is used,...
Hi, Yupeng I have successfully installed MCScanX. The xyz.blast file was generated by command `blastall -i sim.cluster.fasta -d DSim_pilon.fasta -p blastn -e 1e-10 -b 5 -v 5 -m 8 -a...
Dear MCScanX team, I used detect_collinearity_within_gene_families.pl script for analysis, but the output file was blank. In fact, my input file contains collinearity genes. Thanks a lot, Ming
Related-to: https://github.com/wyp1125/MCScanX/issues/55 CI results could be seen on my fork: https://github.com/martin-g/MCScanX/actions/runs/3045129711/jobs/4906306921
Dear MCScanX team, I am trying to download the software but this website: chibba.pgml.uga.edu/mcscan2/ is not working. Could you provide me with a working website please? I would love to...
Good day, For MCScanX, is it Ok to use blast+ blast nucleotide (blastn) instead of blastall? I'm using bellow command : blastn -query xxx.fasta -subject zzz.fasta -evalue 1e-10 -num_threads 40...
 hello ,my friend how could I draw this plot use mcscanx , the SD i had identified, looking forward to your reply
