Restarting with -a option

[conJUSTover]

Hi, thanks for developing MCScanX! I've found it of great use.

I have already ran one analysis using the -a option to stop after writing the .collinearity file, but now I realized that I could benefit from the .html files that are created downstream.

Is there a way to restart MCSCanX from the .collinearity file and only create the html files? Or do I need to redo the entire analysis to create the .html files?

Thanks! Justin