CoverM to assess genomes relative proportion in Metatranscriptomics data?

[JSSaini]

Hi, thank you for the wonderful tool. Can coverM be used for assessing genomes or MAGs proportion in metatranscriptomics reads? I guess it might be the normalization of reads prior to assessing the proportion (%)? Thank you.

[songmj86]

I am also interested in this question. Does CoverM support this function? If so, should I use reads only containing mRNA or reads containing both mRNA and rRNA ?

Thank you