afra

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- Create transcript enhancement - Fix when exon is resized beyond translationStart

aniarya82

based on BIO721 genome bioinformatics course feedback: next to "done" we could have a "skip" button with which people provide one of several reasons (not enough evidence, conflicting evidence, truncated...

yannickwurm

Appropriate licensing and copy right.

2

Hello @yeban and @yannickwurm I would like to bring back to your attention an issue I have mentioned to both of you a few times: Afra should display the Apollo...

monicacecilia

createTranscript Enhancement

2

Signed-off-by: Harsh Gupta [email protected]

hargup

Ability to hide features that extend beyond a specified window

2

Would be incredibly helpful (especially with RNASeq / RNASeq Coverage) to hide all features in any(all) tracks that lie outside a specified window. 1. This would be an easy way...

ilevantis

Handle case where an invalid coordinate is passed to `transcriptToCDNA` or `CDNAToTranscript`

1

See https://github.com/yeban/afra/commit/f3c0a7744ab3c531b1a6a9e013beee1c0ba51ad0#commitcomment-9115749

hargup

Reading frame is not correctly highlighted.

1

yeban

`setORF` will have to take this into account. We won't really annotate 'read through stop codon' while editing. We will just read through it. But when exporting GFF, we can...

yeban

I can't imagine unstranded features or why will strandedness be unknown, but since GFF3 spec allows it, we need the ability to deal with annotations for whose strand is not...

yeban

Context menu items are clickable despite being disabled.

2

JS still calls the undo or redo function if the button is clicked even if it is shown to be disabled. An error message also appears on the browser's javascript...

hargup