tcr-bert
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Invalid version error using tcr-bert conda environment
I'm using commit 63aa483ec25a8f4727d1905267499ede75f524de
When I run the example command to train PCA-SVM:
python bin/embed_and_train_classifier.py example_files/glanville_np177_training_patient.tsv temp -t example_files/glanville_np177_testing_patients.tsv -c svm -g 0
I get the following:
Traceback (most recent call last):
File "/mnt/c/Users/Alex/work/external.repos/tcr-bert/bin/embed_and_train_classifier.py", line 27, in <module>
import featurization as ft
File "/mnt/c/Users/Alex/work/external.repos/tcr-bert/tcr/featurization.py", line 18, in <module>
from transformers import BertTokenizer
File "<frozen importlib._bootstrap>", line 1007, in _find_and_load
File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 664, in _load_unlocked
File "<frozen importlib._bootstrap>", line 627, in _load_backward_compatible
File "<frozen zipimport>", line 259, in load_module
File "/home/alex/anaconda3/envs/tcrbert/lib/python3.9/site-packages/transformers-4.4.2-py3.8.egg/transformers/__init__.py", line 43, in <module>
File "<frozen importlib._bootstrap>", line 1007, in _find_and_load
File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 664, in _load_unlocked
File "<frozen importlib._bootstrap>", line 627, in _load_backward_compatible
File "<frozen zipimport>", line 259, in load_module
File "/home/alex/anaconda3/envs/tcrbert/lib/python3.9/site-packages/transformers-4.4.2-py3.8.egg/transformers/dependency_versions_check.py", line 41, in <module>
File "/home/alex/anaconda3/envs/tcrbert/lib/python3.9/site-packages/transformers-4.4.2-py3.8.egg/transformers/utils/versions.py", line 94, in require_version_core
File "/home/alex/anaconda3/envs/tcrbert/lib/python3.9/site-packages/transformers-4.4.2-py3.8.egg/transformers/utils/versions.py", line 85, in require_version
File "/home/alex/anaconda3/envs/tcrbert/lib/python3.9/site-packages/packaging/version.py", line 52, in parse
return Version(version)
File "/home/alex/anaconda3/envs/tcrbert/lib/python3.9/site-packages/packaging/version.py", line 197, in __init__
raise InvalidVersion(f"Invalid version: '{version}'")
packaging.version.InvalidVersion: Invalid version: '0.10.1,<0.11'