Scaff10X
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cannot find input.dat
Hello,
I would like to run Scaff10x, but after a minute or so that is running, I get this error:
[copettid@kp140-95 scaffolding_Rabv2]$ /data/dario/bin/Scaff10X/src/scaff10x -nodes 15 -longread 0 -gap 100 -matrix 2000 -reads 10 -score 30 -edge 10000 -link 10 -block 50000 -plot barcode_lengtg.png -data input.dat Rabiosa_genome_v2.2.fa Rabv2_Scaff10x_test
Input target assembly file2: /data/dario/scaffolding_Rabv2/Rabiosa_genome_v2.2.fa
cp input.dat align.dat
cp: cannot stat 'input.dat': No such file or directory
Error running command: cp input.dat align.dat
though the file is there and I can run stat on it:
[copettid@kp140-95 scaffolding_Rabv2]$ ls -lrth
total 4.8G
-rwx------+ 1 copettid mpb 4.8G Jul 17 17:35 Rabiosa_genome_v2.2.fa
-rw-rw----+ 1 copettid mpb 324 Jul 17 17:38 input.dat
[copettid@kp140-95 scaffolding_Rabv2]$ stat input.dat
File: input.dat
Size: 324 Blocks: 8 IO Block: 4096 regular file
Device: fd00h/64768d Inode: 4299148105 Links: 1
Access: (0660/-rw-rw----) Uid: (201168/copettid) Gid: (217165/ mpb)
Access: 2019-07-17 17:38:42.055868594 +0200
Modify: 2019-07-17 17:38:42.055868594 +0200
Change: 2019-07-17 17:38:53.782943899 +0200
Birth: -
can you help me figure out the issue? Thanks,
Dario