genomeGTFtools
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converting InterProScan results to genomic coordinates
Hi,
I ran interproscan.sh --cpu 10 --input $1 --seqtype p --iprlookup --pathways --goterms -d $2 --tempdir interproscan-dp-tmp
and got the following output files:
- augustus.hints_utr.aa.gff3
- augustus.hints_utr.aa.tsv
- augustus.hints_utr.aa.xml
Now I would like to load the results into JBrowse. However, the coordinates do not match the genomic coordinates. By any chance, do you have any scripts to convert InterPro scan results to genomic coordinates?
Thank you in advance,
Michal