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is there a more detailed instruction for canvas use, I read the supplementary in cancas paper. thanks a lot.
> That appears to be some outdated documentation. Newer versions of Canvas run using dotnet core. The README has an example command line: > > dotnet /CanvasDIR/Canvas.dll SmallPedigree-WGS --bam=/basespace/Projects/canvas/AppResults/bams/Files/father.bam --bam=/basespace/Projects/canvas/AppResults/bams/Files/mother.bam...
there si only SPW in the wiki, it is really hard for us to use this wonderful tool, the urgent thing is to give some tutorials as soon as possible....
you mean the two enrichment mode are not working any more and germline-WGS has been deprecated, so canvas can use just Somatic-WGS and SmallPedigree-WGS - CNV, just these two modes,...
thank for your reply, can i ask why in the latest version, why you drop the three in dotnet. I think canvas is really powerful, a better docs should be...
you said only Somatic-WGS retained, which just fit for one sample only of WGS, so canvas does not support for targeted sequence any more? since you just use one sample,...
DRAGEN CNV caller, is this free? thanks for you kind and professional help
thanks for people like you making the world better
Thanks a lot @brentp But regionds.bed is a mean depth of region, sometimers we want to evaluate the coverage of per-base in specific region. for example, We want to know...
Thanks a lot @brentp intersect with per-base.bed.gz is a good idea