Simon Woodward

Thank Florian Yes I am putting an entire chain on each of 3 nodes (2 minutes run) but the total runtime is still 6 minutes. Each chain has 3 internal...

Are you using multiple threads? I run BT using the parallel package and have to use clusterSetRNGStream() to control the random seeds. Or maybe your model crashes for certain parameter...

Have you considered using PEST? In my opinion MCMC is more suitable for fast, low dimensional models. PEST was specifically designed for larger, slower models with large numbers of parameters...

I had restart working in parallel I think. My code is here. https://github.com/woodwards/basgra_nz/blob/master/scripts/BC_BASGRA_BT.R

Every time I call runMCMC it adds another 10000 samples to my chain. The chain grows and eventually crashes R due to a memory problem. I thought of solving the...

I believe the only way to do it at present it to pass extra information in as global variables. In R, if a function can't find a variable in its...

Yes I would like this, particularly it should work where there is burnin.

`mono-5.10.0.160-gtksharp-2.12.45-win32-0.msi` Hm, maybe this is too technical for me. I just installed Mono because the instructions said to, I don't really know what it is. A kind of virtual machine?...

I have RTools but it still doesn't install. From the command line: ``` C:\Users\WoodwardS>cd C:\Users\WoodwardS\Downloads\rClr-0.7-4\ C:\Users\WoodwardS\Downloads\rClr-0.7-4>set R="C:\R\R-3.4.4\bin\R.exe" C:\Users\WoodwardS\Downloads\rClr-0.7-4>%R% CMD INSTALL rClr-0.7-4 In R CMD INSTALL * installing to library 'C:/Users/WoodwardS/Documents/R/win-library/3.4'...

I assume the underscore is a typo? `install.packages("path/to/rClr-0.7-4.zip", repos = NULL)` This ran without errors but didn't install the package. ``` > install.packages("C:\\Users\\WoodwardS\\Downloads\\rClr-0.7-4.zip", repos = NULL) Installing package into ‘C:/Users/WoodwardS/Documents/R/win-library/3.4’...