woodoo46

Thanks for your solution. This solves the key error. I am having another issue here: File "/tools/mylib/python-3.8.0-sqlite/lib/python3.8/site-packages/mag_annotator/annotate_bins.py", line 495, in for i in annotations.columns if i.endswith('_id')} AttributeError: 'int' object has...

By the way, this happens below this line: **0:10:10.725917: Merging ORF annotations**

I am using 1.3.

Yes. 1.3 is the output of DRAM-setup.py. I did not find options from DRAM-v.py or DRAM.py to print out the version information.

To upgrade to 1.3.6, do I need to git clone? I used the "Releases" link and downloaded 1.3. If I want to do the correction myself, namely "renaming the column...

Thanks for your quick reply. I got it, it is because of lack of memory. Initially I ran as posted with 10 threads, it failed. I then tried with 2...

I am not sure what I should give to you. One thing is one haplotype may be sequenced a little more than the other according to pacbio haplotagged bam file....

A little bit more information: *) I do not have sequence *) the output distance file is empty Thanks!

Sorry the manta call was copied wrong, it should be like this: chr1 108190708 MantaDEL:180899:0:1:0:0:0 A \ 999 PASS END=108194629;SVTYPE=DEL;SVLEN=-3921..... They all have END tag in the INFO field. The...

Hi, there, I am having the same error message, I am using the pg_run.py command instead of docker. Any idea of it? The command is this pg_run.py asm \ /home/run/reads.ls...