wjaratlerdsiri

Dear Author, I have generated VCF file for lobSTR and use vcftools to get STR frequency (see below): CHROM POS N_ALLELES N_CHR {ALLELE:FREQ} chr14 16035037 3 130 TTTTCTTTTCTTTTCTTTTTTTTTTTTCTTTTCTTTCTTTTCTTTTCTTT:0.938462 TTTTCTTTTCTTTTCTTTTTTTTTTTTCTTTTCTTTCTTTTCTTTTCTTTT:0.0461538 TTTTCTTTTCTTTTCTTTTTTTTTTTTCTTTTCTTTCTTTTCTTTTCTTTTT:0.0153846...

Object has no attribute 'length' in the last step, Output final VCF file

9

Hello, I ran: python2.7 run_metasv.py --version run_metasv.py 0.5 module load bedtools/2.24.0 module load gcc/4.8.4 PATH=$PATH:/bcbiometasv/miniconda/bin PYTHONPATH="${PYTHONPATH}:/bcbiometasv/miniconda:/bcbiometasv/miniconda/lib/python2.7/site-packages" python2.7 run_metasv.py --reference hg19_chromosome.fa --boost_sc \ --age /bcbiometasv/miniconda/bin/AGE-master/age_align \ --pindel_vcf 5.realigned.pindelx5_1toY.N0_PTonly_LI.filtered.somatic.142.recode.vcf 6.realigned.pindelx5_1toY_N0.PTonly_TD.filtered.somatic.142.recode.vcf 7.realigned.pindelx5_1toY_N0.PTonly_D.filtered.somatic.142.recode.vcf 8.realigned.pindelx5_1toY_N0.PTonly_INV.filtered.somatic.142.recode.vcf...