A question about the ppi dataset

[DinikaSen]

I would like to know what is the exact dataset used to generate the toy_ppi dataset in example_data folder (input files used to generate the pre-processed dataset). What are the node features available in the dataset? May I know the link where the dataset is available?

[yashu88]

I think you can check https://downloads.thebiogrid.org/BioGRID to find source.

[preetham-salehundam]

@DinikaSen did you get neccessary info from the URL mentioned by @yashu88 ?

[RexYing]

For raw data, http://snap.stanford.edu/ohmnet/ has the graph structure; http://software.broadinstitute.org/gsea/msigdb/collections.jsp has the feature and label information. c1, c3, c7 are the feature sets; GO is the label set.

[zch42]

I have a question on the feature sets. As the dimensions of c1, c3, c7 are very large, how did you represent each protein using 50-dimensional vectors?

Thanks in advance!

[knightXun]

Could you open your PPI data preprocessing code? @RexYing

[Sutongtong233]

I have a question on the feature sets. As the dimensions of c1, c3, c7 are very large, how did you represent each protein using 50-dimensional vectors?

Thanks in advance!

I have the same question.