Vladimir (Vlad) Kiselev

Hi Jiri, many thanks for your request! It all looks awesome and I will try to merge it ASAP, depending on my availability. Thanks again!

Hi Jiri, I just fetched your changes to my laptop and tried to run the vignette in a Terminal. When I run the first parallelisation it feels super slow, gets...

Hi Jiri, many thanks for your reply! I am on vacation until Friday, will try your suggestions then. Thanks!

Very sorry! I've changed jobs and have absolutely no time to work on this right now. Probably the best is not to rely on me updating it soon... I hope...

Hi, very sorry for a late reply. It didn't provide a lot of messages for us, see this page: https://hemberg-lab.github.io/scRNA.seq.course/biological-analysis.html#clust-methods Or those are the ones you want to get rid...

@yicheinchang sorry for a delayed response, have you figured the problem? If not, could you please share your dataset with [email protected]?

Add this line to the 10X tutorial.

Thanks, we are working on it.

Thanks for your request! I will have a look at it asap, but haven't touched scmap in a while, so will need to remember and test. Will update you once...

Hi, yes, the functions that we used for SVM and RF are still in the utils. The inputs to these functions would be just expression matrices: https://github.com/hemberg-lab/scmap/blob/fd54f6b962123fcab97812ede1d0410ec2f13538/R/Utils.R#L114 Calls to these...