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Published 20 hours ago • verified publisher icon wheretrue

Support CRAM Files

Open tshauck opened this issue 1 year ago • 3 comments

tshauck avatar Feb 06 '24 19:02 tshauck

records looks to be the main way into the iterator... need to deal with the lifetimes somehow... https://github.com/zaeleus/noodles/blob/master/noodles-cram/examples/cram_view_async.rs

tshauck avatar Feb 15 '24 23:02 tshauck

I have a record stream... I think.

Otherwise, it looks like the CRAM record implements a SAM alignment record, so perhaps a first pass, see if we can reuse some of the SAM functionality in a similar way that it's that way for BAM.

tshauck avatar Feb 17 '24 01:02 tshauck

Almost there... big issue right now is that Repository isn't Sync meaning I cannot use it in FileOpener in its current state. :thinking:

tshauck avatar Feb 17 '24 20:02 tshauck