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Add suppot for crosslinking mass spectrometry experiments
In crosslinking mass spectrometry experiments, we try to detect two peptides that are covalently linked from a single MS2 spectrum. Because the pairs can take various forms (target-target, target-decoy, decoy-decoy), a different approach to estimating FDR is needed.
This PR implements the approach from Walzthoeni et al by adding the CrosslinkPsmDataset
and CrosslinkConfidence
classes to mokapot!
There's still a bit to do:
- [ ] Finish building out the unit and system tests
- [ ] Update the documentation