mokapot
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Revert file suffix change for output files
MSAID's streaming feature introduced a regression so that the suffixes of the psms output files are not psms.txt
anymore but only psms
. This is not desirable because it makes it harder for users to understand what what kind of file the output really is.
@jspaezp suggested, to instead use psms.csv
or psms.tsv
as .txt
files are usually space separated while csv
and tsv
are comma and tab separated respectively.
TODO
- [ ] replace all suffixes for output files such as
psms
and other levels (precurors, peptides, etc) with{level}.tsv