Will Fondrie

Unfortunately, cross-linking support has been kicked down the road a bit, so you shouldn't worry about. If you want to tackle the test conversion to pytest-datadir, please feel free to...

Hi @jspaezp - I think this is a great idea. Can you describe more how you imagine it working and maybe a concrete example for how you imagine the interface...

Very cool - I like this idea a lot! My main request is that we stick with a Setuptools-based build. I think plugins can also be specified in the pyproject.toml:...

I've experienced this problem as well. Currently, ppx will already retries connecting up to 10 times, although there is no delay between the attempts. I'm not sure how helpful it...

Thanks @jspaezp! I'll finish taking a look at this and get it merged soon 🙏

Resolved in #75

Good catch - thanks! I'm working on fixing this.

Hi @timosachsenberg 👋 - I'm glad mokapot has been useful. Also, thank you for all of the great open-source work you do too! We're working on some major upgrades to...

Hi @jonathan-krieger-bruker, Thanks for reaching out and sorry its taken so long to get back to you! In general, I would not recommend using protein-inference in mokapot for non-enzymatic data....

Hi @prvst 👋 - you can disable protein inference by not providing a FASTA file (the `--protein` option)