Export failed with PDV 2.1.0

[ECHOFREE28]

I fail to export spectra from a MS fragger search of TIMS TOF data as PNG file. Any suggestion how this could be resolved?

[wenbostar]

Could you share the input data with me so that I can reproduce the error for debugging?

Bo

[ECHOFREE28]

Thank you for your help， here is the data with the Fragepipe：

[ECHOFREE28]

Now I have opened the retrieved data with Fragepipe's built-in PDV software. If I want to export all PSMs of all proteins, how should I check? Thank you very much for your help！

[ECHOFREE28]

I have another question to ask, could you add the protein name or gene name to the spectrum map exported by PDV? Thank you very much for your help

[wenbostar]

Now I have opened the retrieved data with Fragepipe's built-in PDV software. If I want to export all PSMs of all proteins, how should I check? Thank you very much for your help！

@fcyu, could you show how to do this?

[fcyu]

I am not sure what exactly the "export all PSMs of all proteins" means, but clicking the "all proteins" will select all proteins, and then all PSMs will be shown in the "PSMs" panel.

Best,

Fengchao