scRNAseq Integration with CODEX Data

[delucalab]

Hope all is well and my apologies if this is a naive question. I noticed your tutorial on how to integrate scRNAseq data and spatial transcriptomics data and wanted to inquire about whether I could do the same but for scRNAseq data and CODEX multiplex immunofluorescent data using LIGER?

[jw156605]

We haven’t tried liger on codex, but it should work in principle. If you try it, you may want to check out the UINMF algorithm that April has developed. It’s good for integrations where one dataset has a very small number of genes.

On Oct 7, 2021, at 9:19 PM, Chao Gao @.***> wrote:

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Hi, hope you are doing great as well. LIGER does not work on CODEX immunofluorescent data at this moment. Sorry about it.

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