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error after making max-seq 1000000

Open Ahmedbargheet opened this issue 2 years ago • 1 comments

Hi,

I ran "git clone https://github.com/weizhongli/cdhit.git"

Then, changed the directory to cdhit.

Then ran "make MAX_SEQ=10000000"

I got

"g++  -fopenmp -DWITH_ZLIB -O2 -DMAX_SEQ=10000000  cdhit-common.c++ -c
    g++  -fopenmp -DWITH_ZLIB -O2 -DMAX_SEQ=10000000  cdhit.o cdhit-common.o cdhit-utility.o -lz -o cd-hit
    g++  -fopenmp -DWITH_ZLIB -O2 -DMAX_SEQ=10000000  cdhit-est.o cdhit-common.o cdhit-utility.o -lz -o cd-hit-est
    g++  -fopenmp -DWITH_ZLIB -O2 -DMAX_SEQ=10000000  cdhit-2d.o cdhit-common.o cdhit-utility.o -lz -o cd-hit-2d
    g++  -fopenmp -DWITH_ZLIB -O2 -DMAX_SEQ=10000000  cdhit-est-2d.o cdhit-common.o cdhit-utility.o -lz -o cd-hit-est-2d
    g++  -fopenmp -DWITH_ZLIB -O2 -DMAX_SEQ=10000000  cdhit-div.c++ -c
    g++  -fopenmp -DWITH_ZLIB -O2 -DMAX_SEQ=10000000  cdhit-div.o cdhit-common.o cdhit-utility.o -lz -o cd-hit-div
    g++  -fopenmp -DWITH_ZLIB -O2 -DMAX_SEQ=10000000  cdhit-454.c++ -c

But after running the cd-hit-est, I got the same error (Some seqs are too long, please rebuild the program with make parameter MAX_SEQ=new-maximum-length (e.g. make MAX_SEQ=10000000).

Also I edited the file manually, but also still got the same error.

Ahmedbargheet avatar Nov 27 '21 14:11 Ahmedbargheet

Hello!Have you change MAX_SEQ to 10000000 successfully? I have the same problem,may i ask the solve steps?

timeresistance1996 avatar Jun 26 '22 12:06 timeresistance1996