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Latent Dirichlet Allocation coupled with Bayesian Time Series analyses

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build issue associated with downloading resources for vignette building Quitting from lines 201-225 [download pre-generated model outputs] (paper-comparison.Rmd) Error: processing vignette 'paper-comparison.Rmd' failed with diagnostics: cannot open URL 'https://raw.githubusercontent.com/weecology/LDATS-replications/master/output/ldats_ldats.RDS' ---...

fix links on website

Dear Juniper L. Simonis, the Journal of Statistical Software (JSS, https://www.jstatsoft.org/) recently migrated to a new server and editorial system, resulting in a change of the URLs being used for...

isnt calced automatically is a bit tricky, need to think about options a little more maybe this is why the one from multinom was sometimes asymmetric? maybe the asymmetry is...

there might be some bugs in how i coded them up in the first pass

currently, the best fit (by AIC) LDA is all that's passed to the change point model. we should consider propagating the full posterior distribution of the LDA through the change...

relax the restriction on the use of the multinomial model: ![image](https://user-images.githubusercontent.com/23511502/71329649-76a2b080-24dc-11ea-9cff-5adf2f7b7329.png)

the next step upwards in the model structural hierarchy will combine multiple individual full runs of an `LDA_TS` model we need to determine what we'll call it (`mLDA_TS`, `LDA_TSs`, ??),...

The math of the LDA inherently allows for as few as 1 topic. 1 topic is an important boundary situation that we want to be able to include in our...