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non-normalised histogram comparison?

Open celine304 opened this issue 1 year ago • 4 comments

Hi Wouter,

I'm trying to compare sequencing data from two different sequencing platforms (Pacbio sequel and revio) on the same graph but I can only get a graph where both have the same surface area but the read number for one is much higher than the other. Is there a way to not normalise the data like this as it does for nanoplot but show them in the same graph?

NanoComp_OverlayHistogram

Thanks, Celine

celine304 avatar Jul 05 '23 05:07 celine304

Hmm I would expect it not to normalize the dataset... remarkable. Let me look into that, but I will only have time for that after my holidays.

wdecoster avatar Jul 16 '23 20:07 wdecoster

Thanks Wouter, enjoy your holidays :)

celine304 avatar Aug 09 '23 05:08 celine304

Hrm it looks okay in a toy test with 50 and 300 reads:

image

In your plot, how much higher should the read number be for revio? There is at least a large difference in the ~5kb range...

wdecoster avatar Aug 11 '23 09:08 wdecoster

The sequel run had 2.2 million reads compared to 8.6 million for the revio

celine304 avatar Aug 14 '23 00:08 celine304