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Output NanoStats_post_filtering.txt if any filtering is chosen on CLI
For using Nanoplot in workflows it would be handy if the presence of NanoStats_post_filtering.txt
would be predictable from the command line parameters, i.e. independent if anything was filtered.
Currently one check is num_reads_prior - num_reads_post > 0
But for instance maxlength
and minlength
do not trigger the file creation.
Hi @bernt-matthias,
Yes, I understand that's not fully clear and a source of confusion. The difference between these settings is that some 'filters' only hide reads in the read-length plots that are too long, without actually removing them for e.g. quality plots or yield plots.
What is your preferred solution?
Wouter
OK got it. I guess then it just needs to be documented somewhere.