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Output NanoStats_post_filtering.txt if any filtering is chosen on CLI

Open bernt-matthias opened this issue 3 years ago • 2 comments

For using Nanoplot in workflows it would be handy if the presence of NanoStats_post_filtering.txt would be predictable from the command line parameters, i.e. independent if anything was filtered.

Currently one check is num_reads_prior - num_reads_post > 0

But for instance maxlength and minlength do not trigger the file creation.

bernt-matthias avatar May 10 '21 19:05 bernt-matthias

Hi @bernt-matthias,

Yes, I understand that's not fully clear and a source of confusion. The difference between these settings is that some 'filters' only hide reads in the read-length plots that are too long, without actually removing them for e.g. quality plots or yield plots.

What is your preferred solution?

Wouter

wdecoster avatar May 14 '21 20:05 wdecoster

OK got it. I guess then it just needs to be documented somewhere.

bernt-matthias avatar May 15 '21 17:05 bernt-matthias