TotalSegmentator
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wasserth
Tool for robust segmentation of 104 important anatomical structures in CT images
Hi I am getting following error. I system is GPU enabled. It works in fast - checked mode, but in unchecked and cpu mode give below error. Fresh install of...
Traceback (most recent call last): File "/slicer/Slicer-5.2.1-linux-amd64/bin/Python/slicer/util.py", line 2961, in tryWithErrorDisplay yield File "/slicer/Slicer-5.2.1-linux-amd64/NA-MIC/Extensions-31317/TotalSegmentator/lib/Slicer-5.2/qt-scripted-modules/TotalSegmentator.py", line 255, in onApplyButton self.logic.setupPythonRequirements() File "/slicer/Slicer-5.2.1-linux-amd64/NA-MIC/Extensions-31317/TotalSegmentator/lib/Slicer-5.2/qt-scripted-modules/TotalSegmentator.py", line 624, in setupPythonRequirements slicer.util.pip_install(self.totalSegmentatorPythonPackageDownloadUrl) File "/slicer/Slicer-5.2.1-linux-amd64/bin/Python/slicer/util.py", line 3571,...
when I run "TotalSegmentator -i ./s0011_ct.nii.gz -o ./result --radiomics", error:"NameError: name 'tempfile' is not defined. Did you mean: 'compile'?" 
Hey there, there seems to be a systematic error with the annotated v201 dataset on https://zenodo.org/records/10047292 (md5: fe250e5718e0a3b5df4c4ea9d58a62fe), where the `heart` is inside the abdomen (below diaphragm) for multiple cases....
Installation: 【使用TotalSegment 模块 在3D Slicer中分割人体所有器官和骨骼】 https://www.bilibili.com/video/BV1m1421m7f2/?share_source=copy_web&vd_source=0e576be21554bb1ea5d13280e520d904 Load local model files: 【3D Slicer TotalSegmentor 如何本地加载预训练权重】 https://www.bilibili.com/video/BV1aF4m1T73r/?share_source=copy_web&vd_source=0e576be21554bb1ea5d13280e520d904
Hi I tried to install and run but it's giving me errors below. Am using windows 10 and cpu and I pip installed it with and without PyTorch. Wondering if...
When I use --output_type dicom with --task='total' everything seems to work fine. However when I change to --task='body' I get the following error message: ValueError: Could not find D:\---\body_trunc.nii.gz. Did...
I encountered an error while trying to install TotalSegmentator by running pip install . after cloning the repository. The same error goes when I ran "pip install TotalSegmentator": The installation...
I wanted to fine-tune TotalSegmentator's model for aortic segmentation from MR because the aortic root is not very accurate and I have 200 samples that are segmented which I wanted...
**This is a awesome ripo, Thank you @wasserth for this.** Im using on my laptop with a intel core i7 with no gpu in it . python==3.10, torch==2.4.0 , i...
