TotalSegmentator
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wasserth
Tool for robust segmentation of 104 important anatomical structures in CT images
Recent update of `dynamic_network_architectures` package contains a backward-incompatible change. `ResidualEncoderUNet` class is in a different module now: In `dynamic_network_architectures` version 0.2: from dynamic_network_architectures.architectures.unet import ResidualEncoderUNet In `dynamic_network_architectures` version 0.4: from...
``` Traceback (most recent call last): File "/home/i/Downloads/Slicer-5.4.0-linux-amd64/bin/Python/slicer/util.py", line 3146, in tryWithErrorDisplay yield File "/home/i/Downloads/Slicer-5.4.0-linux-amd64/slicer.org/Extensions-31938/TotalSegmentator/lib/Slicer-5.4/qt-scripted-modules/TotalSegmentator.py", line 271, in onApplyButton self.logic.process(self.ui.inputVolumeSelector.currentNode(), self.ui.outputSegmentationSelector.currentNode(), File "/home/i/Downloads/Slicer-5.4.0-linux-amd64/slicer.org/Extensions-31938/TotalSegmentator/lib/Slicer-5.4/qt-scripted-modules/TotalSegmentator.py", line 790, in process self.readSegmentation(outputSegmentation, outputSegmentationFile, task)...
Hi Jakob, first of all congratulations to these results and the reception this project has rightfully received! This is not really about any issue at all, but rather a question:...
Is there currently a way to export the final trained model into ONNX or some similar format? This would be to deploy the model in a standalone c++ or dotnet...
Is there an easy way to remove individual labels in the default task? Thank you and congratulations on this seminal work.
Hello, first of all thanks for your amazing work! I am actually encountering a weird problem. Sometimes the segmentation process gets stuck and does not proceed anymore, it just loops...
Hello, New to TotalSegmentator. I'm looking for the script with the torch class of TotalSegmentator which can take as input the CT scan, and outputs masks of each organ. I'm...
Is there a way to convert the output nifti file to a BMP binary segmentation mask? I am interested in acquiring a binary mask of a 3D input image, as...
Hi, I was using the TotalSegmentator **v1.5.6** for my previous code using python_api. Accidentally, I installed in the same Conda environment the TotalSegmentator **v.2.0.5.** as want to try out the...
Currently, the release of TotalSegmentator has a hard pin on requests in the version available on PyPi (2.0.5). However, in the `setup.py`, there is some logic to only set this...
