TotalSegmentator
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wasserth
Tool for robust segmentation of 104 important anatomical structures in CT images
Hi all, first of all, a huge thanks for this great dataset and sharing it with the community. It is of great value for us and I think I will...
Hi Jakob, I'm working with the training data you've provided, but noticed some potential issues in the NifTi headers. The sform parameters between the ct.nii.gz,  and the label map:...
It would be really helpful for us to now who is using TotalSegmentator and what they are using it for. Therefore, we invite you to comment on this issue: What...
First of all, congratulations on this package it works amazingly well. We've created a [plugin for 3D Slicer](https://github.com/lassoan/SlicerTotalSegmentator) that allows any users easily run it on their computer (can be...
... Another strange problem is that in ITK-Snap, when I first load the ct image and then add the result as segmentation, the direction will be reversed. It was correct...
Hello, Thank you for all your great work. I found some rib data only partially marked. Was it done on purpose? or just the failed segmentation result？ Thanks a lot...
I get the error "syntax error near unexpected token \`('" when combining the masks using totalseg_combine_masks. I found that the issue was caused by missing the line `#!/usr/bin/env python` in...
The model doesn't take .dcm files as an input. Is it known or am I doing something wrong? If its known, do you have a work around to give .dcm...
Hi！ May I ask whether you plan to enlarge the dataset in the future?
# TL; DR After unarchiving `Totalsegmentator_dataset.zip`, access to the very last element of `s0864/ct.nii.gz` results in a CPC check error. Minimum python code to reproduce: ```python import nibabel as nib...
