wang0430
wang0430
Thank you for this nice package! Have a question : I used Seurat to read the dataset and obtain the Seurat object. How Do I get to the Seurat object...
KEGG 斑马鱼
你好，我最近在尝试使用斑马鱼的数据做GO和KEGG富集分析，但是这两个函数都需要基因的keytype是ENTREZID，我无法使用bitr函数将斑马鱼的genemname转换成ENTREZID。
Reading KEGG annotation online: "https://rest.kegg.jp/link/mmu/pathway"... fail to download KEGG data... Error in download.KEGG.Path(species) : Failed to download KEGG data. Wrong 'species' or the network is unreachable. The 'species' should be...
hello author Thank you very much for developing such an excellent analysis tool. I encountered a problem when using the enrichKEGG function today. ”--> No gene can be mapped.... -->...
hi, when i library phangorn, it presents a error, library(phangorn) Loading required package: ape Error: package or namespace load failed for ‘phangorn’ in .doLoadActions(where, attach): error in load action .__A__.1...
Convert("test.h5seurat", dest = "h5ad", overwrite = TRUE) Validating h5Seurat file Warning: Cannot find dataset with cell names Warning: 'assay' not set, setting to 'RNA' Error: Unknown file type: h5seurat
Hello, I used the plotInteractions function for colocalization analysis, but I don't quite understand what this colocalization analysis means, and what does the column name of the matrix obtained after...
Hi, Thank you very much for developing such an excellent tool for cell communication, especially for the spatial transcriptome. I am recently using cellchat to analyze the interaction of spatial...
Hello, I'm running into a problem right now. I use Seurat to analyze spatial transcriptome data, and save it as an RDS file after dimensionality reduction clustering. I want to...
你好， 非常感谢您开发了spark工具，运行速度相较于其他同类型工具快了指数级。我最近使用seurat整合了多张切片进行分析，使用CCA去除批次之后，integrated assay仅有3000个基因了，我该怎么利用去批次整合后的数据分析SVG呢？ 期待您的回复， 谢谢！