Anders Eklund

What is the reason for the difference? AFNI has just recently added a non-parametric option in 3dttest++, the flag -Clustsim will run a permutation test to generate non-parametric cluster p-values....

If you run @update.afni.binaries that should give you the latest AFNI version, which has support for -Clustsim The p-values from Broccoli are inverted (as in randomise in FSL, for visualization...

Hi, it is not possible at the moment, but you can in FSL randomise save the permutations as a text file (option -P) and then read them into BROCCOLI (option...

I implemented it but I never got it faster than randomise in FSL, so right now there is no benefit compared to FSL. I don't know if / when I...

Hi, no one has worked on the Python wrapper for 3-4 years, and I never managed to finish it since I don't know Python. - Anders 2018-08-02 14:25 GMT+02:00 alex-f1tor...

Hi Austin, for the last years I struggled to find funding for my research, but now I have finally secured funding for the next 4 years (not for BROCCOLI per...

Hi Austin, well I need some help with making wrappers for Python and R (similar to the Matlab wrapper), if that would be interesting. Some work was done for a...

I have added a complete example here, does that help? https://github.com/wanderine/BROCCOLI/tree/master/examples 2018-04-13 0:56 GMT+02:00 a-hurst : > Once I get a bit more familiar with BROCCOLI, I'd be happy to...

Adding support for uncorrected p-values is not a quick fix, but I will see what I can do. Den fre 20 apr. 2018 04:20AlexBadea skrev: > With some pointers i...

I don't really have time to maintain BROCCOLI at the moment, sorry. Den sön 15 sep. 2019 kl 19:59 skrev VincentTD : > Hi Anders, > > Thanks for developing...