curatedMetagenomicDataAnalyses

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Hello everyone, when I try to use the function to convert to phyloseq I get an error massage that I do not know how to menage: ``` makePhyloseqFromTreeSummarizedExperiment(alcoholStudy, abund_values =...

MinLuke

Thank you and your team for developing the curatedMetagenomicData package. I have encountered some confusion when using this package. Firstly, whether the relative abundance table has been standardized and does...

zhangy2361

translate cMD1 paper analyses to cMD3

2

This will replace issue https://github.com/waldronlab/curatedMetagenomicData/issues/70 See https://github.com/waldronlab/curatedMetagenomicData/tree/legacy/vignettes/extras for code to move over. This is intended as a learning exercise and will be interesting to see how these analyses have changed...

lwaldron

Make pip requirements file to version Python packages and better control behavior.

jwokaty