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pancan_pcawg_2020 and pan_origimed_2020

Open mjsteinbaugh opened this issue 1 year ago • 4 comments

Hi Waldron Lab,

I'm working on migrating my cBioPortal workflow code to use cBioPortalData, and the package is really excellent. Great work. One thing that I've noticed is that pancan_pcawg_2020 doesn't appear to be supported by the main cBioPortalData() or cBioDataPack() functions.

I checked using this code:

api <- cBioPortalData:::.loadReportData()[["api_build"]]
pack <- cBioPortalData:::.loadReportData()[["pack_build"]]

See related dataset: https://www.cbioportal.org/study/summary?id=pancan_pcawg_2020

I'm happy to help add support for this dataset if you guys can walk me through it. One other question I have is what if the package provided download support for pre-processed MultiAssayExperiment objects instead of the pack file approach? Is that doable?

Best, Mike

mjsteinbaugh avatar Sep 15 '22 14:09 mjsteinbaugh