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svaba segmentation fault (core dumped)

Open yungruifei opened this issue 4 months ago • 11 comments

Hi, When I used svaba to run in germline mode, with the following command: ~/tools/svaba run -t ../../../2.bam -k k.bed -a RT -L 6 -I -p 10 -G ssc11_1.fa

the log file reminds: Running region 1:171,501-196,501(*) on thread 47364435871488

but it stopped and reminds: svaba segmentation fault (core dumped)...

The version I used was conda (1.1) and the most recent released (1.2), it may not be the bug relating to version. The bam file is generated by gtx (FPGA based) with header (sample name: @RG ID:test_pig SM:test_pig), and k.bed is the target region, ssc11_1.fa is the reference genome of pig (V11.1, sus scrofa)

I do not know why it failed to run, so I need help for it.

Best regards! Yung

yungruifei avatar Mar 02 '24 13:03 yungruifei