Missing and incomplete output VCF headers

[fgvieira]

When running the output .svaba.unfiltered.somatic.sv.vcf vcf file through bcftools, I get the warnings:

[W::bcf_hdr_check_sanity] PL should be declared as Number=G
[W::vcf_parse] FILTER 'BLACKLIST' is not defined in the header

Line header:

##FORMAT=<ID=PL,Number=.,Type=Float,Description="Normalized likelihood of the current genotype">

should be:

##FORMAT=<ID=PL,Number=G,Type=Float,Description="Normalized likelihood of the current genotype">

and, it is missing a header like:

##FILTER=<ID=BLACKLIST,Description="SV in blacklisted region">

The first warning also happens on file .svaba.somatic.sv.vcf.