Vladimir Rainish

Hi all, Due to a popular demand, **--sam** flag is back to Blasr (version **5.3**) with a little twist, though : SAM output is now implemented via pbbam. Blasr invocation...

If somebody has already used **Blasr 5.3** version ( which has --sam option back), please, post results here.

Can you post the entire command ? with all the flags etc and the output Please, take a look on blasr wiki page what info needed to be provided, when...

Hi Joseph, Thanks for posting an additional info, When we migrated blasr command line notation from single to double dash, some scripts "escaped" the tests. I'll take a closer look...

Indeed, invocation of blasr in unzip.py in line 200 still uses old single dash notation. Fix is on it's way. Regarding SAM output, if you are using an updated version...