hover_net icon indicating copy to clipboard operation
hover_net copied to clipboard

Published 20 hours ago • verified publisher icon vqdang

How to show WSI result

Open caicai2526 opened this issue 1 year ago • 1 comments

Hi, When I run run_wsi.sh，i got some files, how can i display the results predicted by the model in WSI? thanks

caicai2526 avatar Jul 07 '23 08:07 caicai2526

There are different ways of doing it. You can grab a tile from the WSI and plot the contours like we show in examples/usage.ipynb. Alternatively there are other approaches to view results directly on WSI. For example:

  • Convert to GeoJSON and view with QuPath (you may have to just plot centroids as it may crash with many points)
  • Convert to pyramid tiff and view as a layer in TIAToolbox tile server

simongraham avatar Nov 26 '23 19:11 simongraham