megahit icon indicating copy to clipboard operation
megahit copied to clipboard

Published 20 hours ago • verified publisher icon voutcn

Merge simple edges in the assembly graph?

Open schorlton opened this issue 7 months ago • 1 comments

Hi @voutcn and @aquaskyline,

I ran megahit 1.2.9 and got the following graph with megahit_toolkit contig2fastg 141 final.contigs.fa: image

Note the contig subgraphs I have highlighted in the red boxes - can I safely merge these? I am uncertain why they would have been generated as separate contigs. Thanks!!

schorlton avatar Nov 27 '23 23:11 schorlton