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Cromwell workflows not working

Open fferrann opened this issue 4 years ago • 7 comments

What happened: Volcano (vcctl) only accepts .yaml file format as input for creating jobs. Cromwell outputs bash script files which aren't accepted by vcctl.

What you expected to happen: Volcano to accept Cromwell output's as input format (i.e. bash script) as per the documentation here https://github.com/broadinstitute/cromwell/blob/develop/docs/backends/Volcano.md

How to reproduce it (as minimally and precisely as possible): Add Volcano backend to Cromwell Create a HelloWorld workflow and submit it to Cromwell Cromwell will try to execute the Volcano backend and this error is thrown: Failed to run job: only support yaml file

Anything else we need to know?:

Environment:

  • Volcano Version: 1.4.0
  • Kubernetes version (use kubectl version): 1.20.9
  • Cloud provider or hardware configuration: AKS
  • OS (e.g. from /etc/os-release): Linux Ubuntu
  • Kernel (e.g. uname -a): linux/amd64
  • Install tools:
  • Others:

fferrann avatar Sep 27 '21 11:09 fferrann

/cc @Thor-wl

k82cn avatar Sep 27 '21 12:09 k82cn

Hello 👋 Looks like there was no activity on this issue for last 90 days. Do you mind updating us on the status? Is this still reproducible or needed? If yes, just comment on this PR or push a commit. Thanks! 🤗 If there will be no activity for 60 days, this issue will be closed (we can always reopen an issue if we need!).

stale[bot] avatar Dec 26 '21 13:12 stale[bot]

Issue is still reproducible.

fferrann avatar Jan 24 '22 11:01 fferrann

Sorry for reply late. It has not been reproduced yet. Will take a try later. Besides, perhaps we should reivew the latest cromwell version and take a deeper support.

Thor-wl avatar Jan 24 '22 12:01 Thor-wl

Hello 👋 Looks like there was no activity on this issue for last 90 days. Do you mind updating us on the status? Is this still reproducible or needed? If yes, just comment on this PR or push a commit. Thanks! 🤗 If there will be no activity for 60 days, this issue will be closed (we can always reopen an issue if we need!).

stale[bot] avatar Apr 24 '22 13:04 stale[bot]

Issue is valid

fferrann avatar Apr 24 '22 14:04 fferrann

Hello 👋 Looks like there was no activity on this issue for last 90 days. Do you mind updating us on the status? Is this still reproducible or needed? If yes, just comment on this PR or push a commit. Thanks! 🤗 If there will be no activity for 60 days, this issue will be closed (we can always reopen an issue if we need!).

stale[bot] avatar Jul 30 '22 18:07 stale[bot]

Closing for now as there was no activity for last 60 days after marked as stale, let us know if you need this to be reopened! 🤗

stale[bot] avatar Oct 01 '22 00:10 stale[bot]