Vojtech Huser

allow to specify all cols read as character

1

when reading a given dataset, one column has significant zeros in front of numbers. e.g., 1 vs 0001 Current read.socrata() does not allow to force parsing all cols as characters....

OHDSI researchers created a new mapping for mimic IV. Would you consider adding a link to it in readme? https://github.com/OHDSI/MIMIC

example unit test for HCUP https://github.com/OHDSI/JCdmBuilder/blob/master/tests/HCUPETLToV5/HcupTests.R Documentation: http://ohdsi.github.io/WhiteRabbit/riah_test_framework.html This framework does not test whole set of data but simply picks one row in source and specifies how it should appear...

Some checks are not comparing source and target but only looking at target. e.g., here https://github.com/MIT-LCP/mimic-omop/blob/master/etl/StandardizedClinicalDataTables/VISIT_DETAIL/check_etl.sql#L117 Such DQ checks may be added to OHDSI Tools. On the other hand, OHDSI...

make ETL run in Google Big Query

7

Current code is Postgres SQL flavor specific. (e.g., ::integer) in code. To run on other platforms, notes how to do port this is needed.

subtitle to the project (Argos)

2

MIMIC-OMOP is a clear name and should remain the main title. To show 2020 effort to release **OMOP-shaped** CSV files via PhysioNet, a subtitle (or subproject/component) `Argos` can be added...

Use this ETL as a way to provide MIMIC in OMOP directly on the Physionet website

34

This ETL allows local user to download and convert-at-many sites How about convert-once and allow sites to download the converted dataset. This would save MIMIC users some effort and make...

clinical drug specific rules for DQA - extendind DQD with such rules (and KB)

1

We crated a KB for drug history events. Details in the fall AMIA 2020 abstract below. This is initiating discussion of adding our work into DQD Introduction Healthcare billing claims...

lab min values should be consistent for same lab test and units

1

for microgram and miligram, I would expect 0.003 and 3 in minimal thresholds current KB  Even better, encourage single unit per lab test (new type of DQ effort towards...

Move Heel rules fully to DQD

3

readme may try to explain the relationship Also, is the plan to move some or all the rules from Heel to DQD?