Can't generate fem

[Loghonox]

when I try python dicom2fem/dicom2fem.py -f /home/loghonox/Downloads/EE5A464D.dcm

I have error:

Traceback (most recent call last): File "/home/loghonox/Documents/dicom2fem/dicom2fem/dicom2fem.py", line 873, in main() File "/home/loghonox/Documents/dicom2fem/dicom2fem/dicom2fem.py", line 864, in main mw.loadDcm(filename=options.dcmfile) File "/home/loghonox/Documents/dicom2fem/dicom2fem/dicom2fem.py", line 562, in loadDcm self.dcm_3Ddata = data['data'] KeyError: 'data'

when I try wit folder:

Traceback (most recent call last): File "/home/loghonox/Documents/dicom2fem/dicom2fem/dicom2fem.py", line 873, in main() File "/home/loghonox/Documents/dicom2fem/dicom2fem/dicom2fem.py", line 861, in main mw.loadDcmDir() File "/home/loghonox/Documents/dicom2fem/dicom2fem/dicom2fem.py", line 438, in loadDcmDir dcr = dcmreader.DicomReader(os.path.abspath(self.dcmdir), File "/home/loghonox/anaconda3/lib/python3.9/site-packages/io3d/dcmreaddata.py", line 165, in init self.set_series_number(self.series_number) File "/home/loghonox/anaconda3/lib/python3.9/site-packages/io3d/dcmreaddata.py", line 179, in set_series_number raise ValueError( ValueError: No data for series number 2 in directory /home/loghonox/Downloads

any solution?

[vlukes]

Hi @Loghonox,

-f option is used to load DCM files generated by dicom2fem. It is a file in Matlab format containing a 3D matrix and voxel size information. You probably need to load a series of dicom files stored in a directory. Then use -d option:

python dicom2fem/dicom2fem.py -d /home/loghonox/Downloads/

Regards Vladimir