vitessceR
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Published
20 hours ago •
vitessce
vitessce
R API and htmlwidget for Vitessce
vitessce-r
R API and htmlwidget facilitating interactive visualization of spatial single-cell data with Vitessce.
Installation
Installation requires R 4.0.0 or greater.
install.packages("devtools")
devtools::install_github("vitessce/vitessceR")
Usage
library(vitessceR)
vc <- VitessceConfig$new()
vc$widget()
For full examples, visit the documentation.
For questions and help with using the package, please open a discussion.
Development
npm install
npm run build
setwd("path/to/vitessceR")
install.packages("htmlwidgets")
install.packages("devtools")
devtools::install()
devtools::load_all()
Testing
devtools::check()
devtools::test()
Documentation
install.packages("devtools")
install.packages("pkgdown")
devtools::document()
pkgdown::build_site()
Documentation is automatically deployed to GitHub pages with GitHub actions.
Deployment
Currently, the package is only distributed through GitHub. In the future, we plan to submit the package to CRAN or Bioconductor.
To increment the package version, update it in DESCRIPTION.
vitessce