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Smart Copy/Paste behavior with multiple reactions redesign and implement

Open ACowan0105 opened this issue 2 years ago • 11 comments

Attempt to paste copied reaction either within the same model or a different one generates a null pointer exception. When trying to paste a flux reaction, VCell correctly asks to identify compartments, but then generates a null pointer exception.

ACowan0105 avatar Feb 16 '23 15:02 ACowan0105

Restored Frank's code for single reaction copy and paste Fixed a Null pointer exception in rules copy Fixed Null pointer exception in stochastic spatial post processing table When copy and paste

danv61 avatar Feb 21 '23 20:02 danv61

PR #808 Commit 1275ba6

danv61 avatar Feb 21 '23 20:02 danv61

Smart copy and paste has issues with copying and pasting multiple reactions with common species.

Currently, all species in both reactions are given individual names, zero mapping of common species.

CodeByDrescher avatar Mar 15 '23 15:03 CodeByDrescher

Looks like this is almost fixed. One remaining problem is for scenario when a new copied species is involved in 2 copied reactions. Upon pasting, the copied single species is pasted as 2 separate species.

lesloew avatar Mar 20 '23 18:03 lesloew