Viraj Deshpande

Thanks. Here is an example use case. You have a dataset of multiple samples (parent workflow) and you want to run multiple analysis for each sample in a different directory...

Owen, Excellent catch and great work figuring out the fix! I have add the fix to the branch runtime_discordant_clustering and will merge into master once I am finished testing some...

Hello @groveswallow, Does the BAM file to have chromosome names in the format "1", "2", "3", .... or "chr1", "chr2", ..? If it is the first case, then can you...

It seems like an issue with "chr" is removed from the chromosome names by ReadDepth. You have 2 options - change the alts.dat file to add include "chr" in the...

Are you using the latest commit from AA? If not can you do a git pull and try again?

The warnings are expected. Is the output stuck at this place?

@jluebeck @groveswallow. So far the output seems as expected, it is just taking a while to run. The cycles file, graph file and .out files for amplicon 1 will get...

@groveswallow, If you can share the .log file with me, I can check try to assess the cause of slowdown.

The log output so far seems fine to me. As you suggested it is getting stuck due to the mosek license.. Were you able to update the mosek license and...

Hello @bkinnersley, That's a good question. Strictly speaking there is a risk of multiple processes modifying this file. However, it is highly unlikely that the collision will actually occur because...